Stem-loop sequence zma-MIR172e

Accession

MI0001840 (change log)

Description

Zea mays miR172e stem-loop

Gene family

MIPF0000035; MIR172

Literature search

36 open access papers mention zma-MIR172e
(211 sentences)

Stem-loop

   cagcc    gg    u  ug a ug               a     ugcaugccaacauaaugcgcguguucaugcauccaucgcc 
5'      agcc  ugau uc  g g  gcaucaucaagauuc cacac                                        g
        ||||  |||| ||  | |  ||||||||||||||| |||||                                        c
3'      ucgg  acua ag  u c  cguaguaguucuaag gugug                                        c
   -uaua    ga    u  gu a gu               g     uauguguauauauauauaauauauacuacguacuacgucg 

Deep sequencing

2756 reads, 601 reads per million, 138 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr3: 145801592-145801765 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075A544_4577
• miRBase Tracker:MI0001840

Mature sequence zma-miR172e

• Accession: MIMAT0001742
• Sequence: 135 - ggaaucuugaugaugcugcau - 155
• Deep sequencing: 2353 reads, 6 experiments
• Evidence: by similarity; MI0001140
• Database links:
  • RNAcentral:URS0000263070_4577

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).