miRBase entry: zma-MIR172e

Stem-loop zma-MIR172e


Accession
MI0001840
Description
Zea mays zma-MIR172e precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
36 open access papers mention zma-MIR172e
(214 sentences)

Sequence

307 reads, 2028 reads per million, 10 experiments
cagccagccggugauuucuggaguggcaucaucaagauucacacacugcaugccaacauaaugcgcguguucaugcauccaucgccgccgcugcaucaugcaucauauauaauauauauauauguguaugugugGGAAUCUUGAUGAUGCUGCAUuggauaucaagggcuauau
.....((((..((((.(((((.((((((((((((((((((.(((((.((((((((......)).))))))..(((((......((....))))))).(((((.((((((((.....)))))))))))))))))).)))))))))))))))))).))))).))))..))))....

Structure
cagcc    gg    u     a                  a     ugcaugccaacauaaugcgcguguucaugcauccaucgccgccgcugcauc     u        a 
     agcc  ugau ucugg guggcaucaucaagauuc cacac                                                   augca cauauaua u
     ||||  |||| ||||| |||||||||||||||||| |||||                                                   ||||| |||||||| a
     ucgg  acua agguU CGUCGUAGUAGUUCUAAG gugug                                                   uaugu guauauau u
-uaua    ga    u     A                  G     ---------------------------------------------------     -        a 


Annotation confidence Not enough data
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Genome context
chr3: 145801592-145801765 [+]

Database links

Mature zma-miR172e

Accession MIMAT0001742
Description Zea mays zma-miR172e mature miRNA
Sequence 135 - GGAAUCUUGAUGAUGCUGCAU - 155
Evidence not_experimental
Database links

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13