miRBase entry: zma-MIR171k

Stem-loop zma-MIR171k


Accession
MI0001843
Description
Zea mays zma-MIR171k precursor miRNA
Gene family
MIPF0000104; MIR171_2

Literature search
19 open access papers mention zma-MIR171k
(50 sentences)

Sequence

66 reads, 1657 reads per million, 7 experiments
gggaggaagaagacgacauggcgUGGUAUUGUUUCGGCUCAUGUccuucuugacuggaugugauGUGAGCCGAACCAAUAUCACUcauguauucuucauucuga
...((((.(((((..((((((.(((((((((.((((((((((((((.(((.....))).).))))))))))))).)))))))))))))))..))))).))))..

Structure
ggg    a     cg      c         U             - u   u 
   agga gaaga  acaugg gUGGUAUUG UUCGGCUCAUGUc c ucu g
   |||| |||||  |||||| ||||||||| ||||||||||||| | ||| a
   ucuu cuucu  uguacU CACUAUAAC AAGCCGAGUGuag g agg c
-ag    a     ua      -         C             u u   u 


Annotation confidence Not enough data
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Genome context
chr10: 138536838-138536941 [-]

Database links

Mature zma-miR171k-5p

Accession MIMAT0015205
Description Zea mays zma-miR171k-5p mature miRNA
Sequence 24 - UGGUAUUGUUUCGGCUCAUGU - 44
Evidence experimental
Illumina [2]
Database links

Mature zma-miR171k-3p

Accession MIMAT0001745
Description Zea mays zma-miR171k-3p mature miRNA
Sequence 65 - GUGAGCCGAACCAAUAUCACU - 85
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13