miRBase entry: sbi-MIR399h

Stem-loop sbi-MIR399h


Accession
MI0001849
Description
Sorghum bicolor sbi-MIR399h precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
3 open access papers mention sbi-MIR399h
(5 sentences)

Sequence

aguguucaggguaagaaucacagugcgguucuccucuggcauggaggccaacauagcaggcauuggagaaugcacagcgcuaucgccaucccUGCCAAAGGAGAAUUGCCCUGccauucgguauaacccugg
......((((((..((((..(((.(((((((((((.(((((.((((((....(((((.((((((....))))).)...))))).))).))).))))).))))))))))).)))..))))......)))))).

Structure
aguguu      ----aa    ca   u           c     u   -   caac     --a -     g 
      cagggu      gaau  cag gcgguucuccu uggca gga ggc    auagc   g gcauu g
      ||||||      ||||  ||| ||||||||||| ||||| ||| |||    |||||   | |||||  
      guccca      cuua  GUC CGUUAAGAGGA ACCGU ccu ccg    uaucg   c cguaa a
-----g      auaugg    cc   C           A     c   a   ---c     cga a     g 


Annotation confidence Not enough data
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Genome context
chr10: 48189611-48189742 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sbi-MIR399h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR399h

Accession MIMAT0001751
Description Sorghum bicolor sbi-miR399h mature miRNA
Sequence 93 - UGCCAAAGGAGAAUUGCCCUG - 113
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13