miRBase entry: sbi-MIR159b

Stem-loop sbi-MIR159b


Accession
MI0001851
Description
Sorghum bicolor sbi-MIR159b precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
2 open access papers mention sbi-MIR159b
(2 sentences)

Sequence

ugaaugaagauaugaagaagaagacgacgacgaugaagaaggcgaagaaaagcgaacaaagagcucccuucgauccaauccaggaggggaaguggucgguugcagcugccgguucauggaugccucucuggugcagcaaugacugaugcucaccugcacuugcaugggugugcaugacccgggagaugaacccaccaucaucuuucccucgugCUUGGAUUGAAGGGAGCUCCUcucucuuucucucuuucuc
....................................((((((.((.((((((.((.....((((((((((((((((((..((.(((((((((((((.((((.((.((.((((.(((((.((((((....(((((((...((((....).))).))))))).....)))))).))))).)))).)).)))))).))))....))))))))).)).)))))))))))))))))).)).)).)))))).)))))).

Structure
ugaaugaagauaugaagaagaagacgacgacgauga      c  a    -  c  acaaa                  uc  g         ----    c    g  g  g    u     g      -cucu       caa   - u 
                                    agaagg ga gaaa ag ga     gagcucccuucgauccaa  ca gaggggaag    uggu gguu ca cu ccgg ucaug augccu     ggugcag   uga c g
                                    |||||| || |||| || ||     ||||||||||||||||||  || |||||||||    |||| |||| || || |||| ||||| ||||||     |||||||   ||| |  
                                    ucuuuc cu cuuu uc cU     CUCGAGGGAAGUUAGGUU  gu cucccuuuc    acca ccaa gu ga ggcc aguac uguggg     ucacguc   acu g a
-----------------------------------c      u  -    c  u  ----C                  -C  g         uacu    c    -  a  g    c     g      uacgu       --c   c u 


Annotation confidence Not enough data
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Genome context
chr3: 1229688-1229940 [-]

Database links

Mature sbi-miR159b

Accession MIMAT0001753
Description Sorghum bicolor sbi-miR159b mature miRNA
Sequence 214 - CUUGGAUUGAAGGGAGCUCCU - 234
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13