miRBase entry: sbi-MIR164c

Stem-loop sbi-MIR164c


Accession
MI0001852
Description
Sorghum bicolor sbi-MIR164c precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
5 open access papers mention sbi-MIR164c
(13 sentences)

Sequence

uaugguguguuugugcagggUGGAGAAGCAGGACACGUGAGcgaccauccaguuuccaucgcuggcucuccgcugcgggcgcugccgugcguuggaucgucguuggguggucgcucauguguccguccucuccaccgagcaccgguacauccg
...((((((((.((((..((((((((.(..((((((((((((((((((((((..((((.(((((((....((((...))))..)))).))).))))......))))))))))))))))))))))..).))))))))..)))).))))))))..

Structure
uau        u    ag        A CA                      ----uu    u   -    ucuc    g 
   gguguguu gugc  ggUGGAGA G  GGACACGUGAGcgaccauccag      ucca cgc uggc    cgcu  
   |||||||| ||||  |||||||| |  ||||||||||||||||||||||      |||| ||| ||||    |||| c
   cuacaugg cacg  ccaccucu c  ccuguguacucgcugguggguu      aggu gcg gccg    gcgg  
-gc        c    ag        c ug                      gcugcu    u   u    --uc    g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 68718394-68718546 [-]

Database links

Mature sbi-miR164c

Accession MIMAT0001754
Description Sorghum bicolor sbi-miR164c mature miRNA
Sequence 21 - UGGAGAAGCAGGACACGUGAG - 41
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13