Stem-loop sequence dre-let-7a-4

Accession

MI0001861 (change log)

Previous IDs

dre-let-7a-5

Description

Danio rerio let-7a-4 stem-loop

Gene family

MIPF0000002; let-7

Literature search

43 open access papers mention dre-let-7a-4
(320 sentences)

Stem-loop

      -a  u      au   g   u             ---uaga  ua 
5' gcg  ug cucggg  gag uag agguuguauaguu       gu  c
   |||  || ||||||  ||| ||| |||||||||||||       ||   
3' cgc  ac gagcuc  uuc auc uccgacaugucaa       ca  a
      ag  -      cu   g   c             uagaggg  ca 

Deep sequencing

308520 reads, 2.1e+04 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr5: 29990452-29990544 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-let-7a-4

• dre-mir-100-2: chr5: 29990147-29990221 [+]
• dre-let-7a-4: chr5: 29990452-29990544 [+]
• dre-mir-125b-2: chr5: 29998762-29998847 [+]

Database links

• EntrezGene:mirlet7a-4
• EntrezGene:mirlet7a-4
• RNAcentral:URS000075DCA8_7955
• miRBase Tracker:MI0001861

Mature sequence dre-let-7a

• Accession: MIMAT0001759
• Sequence: 15 - ugagguaguagguuguauaguu - 36
• Deep sequencing: 1860970 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000416056_7955
• Predicted targets:
  • TargetScanFish:dre-let-7a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).