Stem-loop sequence dre-let-7a-6

Accession

MI0001863 (change log)

Previous IDs

dre-let-7a-7

Description

Danio rerio let-7a-6 stem-loop

Gene family

MIPF0000002; let-7

Literature search

43 open access papers mention dre-let-7a-6
(320 sentences)

Stem-loop

      -a   aaccug          ca   ug         gu         ---- g    a       
5' cac  gug      uguguuucuu  agg  agguaguag  uguauaguu    u uggg aggauc 
   |||  |||      ||||||||||  |||  |||||||||  |||||||||    | |||| ||||| a
3' gug  cac      acacagagag  ucc  uccguuauc  acauaucaa    g acuu uccuac 
      ag   -cagua          --   cu         ug         uagu g    a       

Deep sequencing

312503 reads, 2.14e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr6: 54506458-54506586 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mirlet7a-6
• EntrezGene:mirlet7a-6
• RNAcentral:URS0000759C43_7955
• miRBase Tracker:MI0001863

Mature sequence dre-let-7a

• Accession: MIMAT0001759
• Sequence: 29 - ugagguaguagguuguauaguu - 50
• Deep sequencing: 1860970 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000416056_7955
• Predicted targets:
  • TargetScanFish:dre-let-7a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).