miRBase entry: dre-let-7c-1

Stem-loop dre-let-7c-1

Accession

MI0001866

Description

Danio rerio dre-let-7c-1 precursor miRNA

Literature search

40 open access papers mention dre-let-7c-1
(217 sentences)

Sequence

11840 reads, 860 reads per million, 11 experiments

cugagagugugugcauccaggcUGAGGUAGUAGGUUGUAUGGUUuagaauuuugcccugggaguuaaCUGUACAACCUUCUAGCUUUCCuuggagcucacaagccag
(((.(..((((.((.((((((..(((.(((.(((((((((((((...((((((......))))))))))))))))))).))).)))..)))))))).))))..))))

Structure

   a ag    u  a      cU   G   U             uag      gc 
cug g  ugug gc uccagg  GAG UAG AGGUUGUAUGGUU   aauuuu  c
||| |  |||| || ||||||  ||| ||| |||||||||||||   ||||||   
gac c  acac cg agguuC  UUC AUC UCCAACAUGUCaa   uugagg  c
   - ga    u  -      CU   G   U             ---      gu

Annotation confidence Medium

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Genome context

chr15: 29795823-29795929 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-let-7c-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-let-7c-5p

Accession	MIMAT0001761
Description	Danio rerio dre-let-7c-5p mature miRNA
Sequence	23 - UGAGGUAGUAGGUUGUAUGGUU - 44
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-let-7c-3p

Accession	MIMAT0031930
Description	Danio rerio dre-let-7c-3p mature miRNA
Sequence	68 - CUGUACAACCUUCUAGCUUUCC - 89
Evidence	not_experimental

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293