Stem-loop sequence dre-let-7c-2

Accession

MI0001867 (change log)

Description

Danio rerio let-7c-2 stem-loop

Gene family

MIPF0000002; let-7

Literature search

40 open access papers mention dre-let-7c-2
(206 sentences)

Stem-loop

         a      cu   g   u             ---  ga   a 
5' gugugc uccagg  gag uag agguuguaugguu   uc  aug c
   |||||| ||||||  ||| ||| |||||||||||||   ||  |||  
3' cacaug agguuc  uuc auc uccaacaugucaa   ag  uac a
         -      cu   g   u             uug  gg   c 

Deep sequencing

311468 reads, 2.14e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr10: 38072077-38072168 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-let-7c-2

• dre-mir-99-2: chr10: 38074312-38074391 [-]
• dre-let-7c-2: chr10: 38072077-38072168 [-]

Database links

• EntrezGene:mirlet7c-2
• EntrezGene:mirlet7c-2
• RNAcentral:URS0000759DE2_7955
• miRBase Tracker:MI0001867

Mature sequence dre-let-7c-5p

• Accession: MIMAT0001761
• Previous IDs: dre-let-7c
• Sequence: 15 - ugagguaguagguuguaugguu - 36
• Deep sequencing: 622827 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000050DE77_7955
• Predicted targets:
  • TargetScanFish:dre-let-7c

Mature sequence dre-let-7c-3p

• Accession: MIMAT0031930
• Sequence: 60 - cuguacaaccuucuagcuuucc - 81
• Deep sequencing: 268 reads, 10 experiments
• Evidence: not experimental

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).