Stem-loop sequence dre-let-7d-2

Accession

MI0001870 (change log)

Previous IDs

dre-let-7d-3

Description

Danio rerio let-7d-2 stem-loop

Gene family

MIPF0000002; let-7

Literature search

42 open access papers mention dre-let-7d-2
(278 sentences)

Stem-loop

            cu   g   uu            uu  au  uaa 
5' cgcugcagg  gag uag  gguuguaugguu  gc  ca   u
   |||||||||  ||| |||  ||||||||||||  ||  ||   c
3' guggcgucc  uuc auc  ccaacaugucaa  ug  gu   a
            cu   g   uu            -u  ag  ccg 

Deep sequencing

222206 reads, 1.55e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr19: 9429857-9429944 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mirlet7d-2
• EntrezGene:mirlet7d-2
• RNAcentral:URS000075C415_7955
• miRBase Tracker:MI0001870

Mature sequence dre-let-7d-5p

• Accession: MIMAT0001762
• Previous IDs: dre-let-7d
• Sequence: 11 - ugagguaguugguuguaugguu - 32
• Deep sequencing: 447651 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075C7A7_7955
• Predicted targets:
  • TargetScanFish:dre-let-7d

Mature sequence dre-let-7d-3p

• Accession: MIMAT0031931
• Sequence: 59 - cuguacaaccuucuagcuuucc - 80
• Deep sequencing: 266 reads, 9 experiments
• Evidence: not experimental

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).