Stem-loop sequence dre-mir-9-4

Accession

MI0001882 (change log)

Description

Danio rerio miR-9-4 stem-loop

Gene family

MIPF0000014; mir-9

Literature search

22 open access papers mention dre-mir-9-4
(213 sentences)

Stem-loop

   -u          uucuc       a       g     -   u 
5'   ggguuaguuu     uuugguu ucuagcu uauga guu a
     ||||||||||     ||||||| ||||||| ||||| ||| u
3'   cuuaaucaaa     aagccaa agaucga auacu uag g
   ac          uaugu       g       a     a   u 

Deep sequencing

49180 reads, 1.58e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr22: 18254769-18254855 [+]
• Overlapping transcripts:

  sense

  OTTDART00000012224 ; si:dkey-11n6.3-001; intron 1

  OTTDART00000012225 ; si:dkey-11n6.3-002; intron 2

  ENSDART00000141535 ; si:dkey-11n6.3-001; intron 1

  ENSDART00000148357 ; si:dkey-11n6.3-002; intron 2

Database links

• EntrezGene:mir9-4
• EntrezGene:mir9-4
• RNAcentral:URS000075E8FB_7955
• miRBase Tracker:MI0001882

Mature sequence dre-miR-9-5p

• Accession: MIMAT0001769
• Previous IDs: dre-miR-9
• Sequence: 15 - ucuuugguuaucuagcuguauga - 37
• Deep sequencing: 220384 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00004208C5_7955
• Predicted targets:
  • TargetScanFish:dre-miR-9

Mature sequence dre-miR-9-4-3p

• Accession: MIMAT0031932
• Sequence: 53 - uaaagcuagagaaccgaaugua - 74
• Deep sequencing: 17716 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000779C7A_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).