Stem-loop dre-mir-9-3

Accession

MI0001883

Description

Danio rerio dre-mir-9-3 precursor miRNA

Gene family

MIPF0000014; mir-9

Literature search

22 open access papers mention dre-mir-9-3
(214 sentences)

Sequence

41163 reads, 2148 reads per million, 11 experiments

ucaggggguugguuucucUCUUUGGUUAUCUAGCUGUAUGAguuauaacacugucaUAAAGCUAGAUAACCGAAAGUagaaauaauucccaaaaucuuugg
...((((((((.(((((((.(((((((((((((((.(((((............))))).))))))))))))))))).)))))))))))))...........

Structure

--------uca        g     -  C               G     guuau 
           ggggguug uuucu cU UUUGGUUAUCUAGCU UAUGA     a
           |||||||| ||||| || ||||||||||||||| |||||      
           cccuuaau aaaga GA AAGCCAAUAGAUCGA AUacu     a
gguuucuaaaa        -     U  -               A     gucac 

Annotation confidence High

Genome context

chr25: 8551240-8551340 [-]

Mature dre-miR-9-5p

• Accession: MIMAT0001769
• Description: Danio rerio dre-miR-9-5p mature miRNA
• Sequence: 19 - UCUUUGGUUAUCUAGCUGUAUGA - 41
• Evidence: experimental ; cloned [1]

Mature dre-miR-9-3p

• Accession: MIMAT0003156
• Description: Danio rerio dre-miR-9-3p mature miRNA
• Sequence: 57 - UAAAGCUAGAUAACCGAAAGU - 77
• Evidence: experimental ; array [2], in-situ [2]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293


2. PubMed ID: 15919954
   MicroRNA expression in zebrafish embryonic development
   "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
   "Science (2005) 309:310-311