Stem-loop dre-mir-15a-1

Accession

MI0001891

Description

Danio rerio dre-mir-15a-1 precursor miRNA

Gene family

MIPF0000006; mir-15

Literature search

12 open access papers mention dre-mir-15a-1
(27 sentences)

Sequence

1344 reads, 226 reads per million, 11 experiments

ccugucgguacugUAGCAGCACAGAAUGGUUUGUGaguuauaacgggggugCAGGCCGUACUGUGCUGCGGCAacaacgacagg
(((((((....(((.(((((((((.(((((((((................))))))))).))))))))).)))....)))))))

Structure

       guac   A         A         Gaguuau 
ccugucg    ugU GCAGCACAG AUGGUUUGU       a
|||||||    ||| ||||||||| |||||||||        
ggacagc    ACG CGUCGUGUC UGCCGGACg       a
       aaca   G         A         ugggggc 

Annotation confidence High

Genome context

chr1: 46722622-46722705 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-15a-1

Mature dre-miR-15a-5p

• Accession: MIMAT0001772
• Description: Danio rerio dre-miR-15a-5p mature miRNA
• Sequence: 14 - UAGCAGCACAGAAUGGUUUGUG - 35
• Evidence: experimental ; cloned [1]

Mature dre-miR-15a-3p

• Accession: MIMAT0003395
• Description: Danio rerio dre-miR-15a-3p mature miRNA
• Sequence: 52 - CAGGCCGUACUGUGCUGCGGCA - 73
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293