miRBase entry: dre-mir-16a

Stem-loop dre-mir-16a

Accession

MI0001894

Description

Danio rerio dre-mir-16a precursor miRNA mir-15

Gene
family?

RF00455; mir-15

Literature search

9 open access papers mention dre-mir-16a
(15 sentences)

Sequence

1059 reads, 84 reads per million, 11 experiments

ccuuccucgcuuUAGCAGCACGUAAAUAUUGGUGuguuauagucaaggccaaccccaauauuaugugugcugcuucaguaaggcagg
(((.(((.(((..(((((((((((((((((((.(((((........)))..)).)))))))).)))))))))))..))).))).)))

Structure

   u   c   uU           -        U  --   aua 
ccu ccu gcu  AGCAGCACGUA AAUAUUGG Gu  guu   g
||| ||| |||  ||||||||||| |||||||| ||  |||    
gga gga uga  ucgucgugugu uuauaacc ca  cgg   u
   c   a   cu           a        c  ac   aac

Annotation confidence Medium

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Genome context

chr15: 1543857-1543943 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-16a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-16a

Accession	MIMAT0001774
Description	Danio rerio dre-miR-16a mature miRNA
Sequence	13 - UAGCAGCACGUAAAUAUUGGUG - 34
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293