Stem-loop sequence dre-mir-17a-2

Accession

MI0001898 (change log)

Description

Danio rerio miR-17a-2 stem-loop

Gene family

MIPF0000001; mir-17

Literature search

20 open access papers mention dre-mir-17a-2
(169 sentences)

Stem-loop

        u    u  -ca        a  g     g   uuca 
5' gucac guag gu   aagugcuu ca ugcag uag    a
   ||||| |||| ||   |||||||| || ||||| |||    u
3' cagug cauu cg   uucacgga gu acguc auc    a
        c    u  aac        g  g     -   uaau 

Deep sequencing

33395 reads, 1.2e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr9: 53436944-53437026 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-17a-2

• dre-mir-17a-2: chr9: 53436944-53437026 [-]
• dre-mir-18b: chr9: 53436831-53436917 [-]
• dre-mir-92a-2: chr9: 53436280-53436374 [-]

Database links

• EntrezGene:mir17a-2
• EntrezGene:mir17a-2
• RNAcentral:URS000075AB9E_7955
• miRBase Tracker:MI0001898

Mature sequence dre-miR-17a-5p

• Accession: MIMAT0001777
• Previous IDs: dre-miR-17a
• Sequence: 14 - caaagugcuuacagugcaggua - 35
• Deep sequencing: 64667 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000130255_7955
• Predicted targets:
  • TargetScanFish:dre-miR-17a

Mature sequence dre-miR-17a-2-3p

• Accession: MIMAT0031938
• Sequence: 50 - acugcaguggaggcacuucaagc - 72
• Deep sequencing: 1073 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000783B4D_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).