miRBase entry: dre-mir-19d

Stem-loop dre-mir-19d


Accession
MI0001906
Description
Danio rerio dre-mir-19d precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
4 open access papers mention dre-mir-19d
(28 sentences)

Sequence

4096 reads, 299 reads per million, 11 experiments
guugugugacggucAGCUUUGCGGGGUGGGCAGUCAGCcuccguguggccgcUGUGCAAACCCAUGCAAAACUGAgcgcugcgcuac
...(((((.((.((((.((((((((((..(((..((((..((....))..)))))))..)))).)))))).)))).)).)))))...

Structure
guu     a  g    C      -    GG   GU    cu  g 
   gugug cg ucAG UUUGCG GGGU  GCA  CAGC  cc u
   ||||| || |||| |||||| ||||  |||  ||||  ||  
   cgcgu gc AGUC AAACGU CCCA  CGU  GUcg  gg g
cau     c  g    A      A    AA   --    cc  u 


Annotation confidence High
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Genome context
chr14: 100660-100746 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-19d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-19d-3p

Accession MIMAT0001785
Description Danio rerio dre-miR-19d-3p mature miRNA
Sequence 53 - UGUGCAAACCCAUGCAAAACUGA - 75
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-19d-5p

Accession MIMAT0031941
Description Danio rerio dre-miR-19d-5p mature miRNA
Sequence 15 - AGCUUUGCGGGGUGGGCAGUCAGC - 38
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293