miRBase entry: dre-mir-20a

Stem-loop dre-mir-20a


Accession
MI0001907
Description
Danio rerio dre-mir-20a precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
9 open access papers mention dre-mir-20a
(14 sentences)

Sequence

73887 reads, 2679 reads per million, 11 experiments
ucuuaaauaaaucuccuaauguugcaguuguguuagaguuucagcagugcUAAAGUGCUUAUAGUGCAGGUAGuauuucugucaucuACUGCAGUGUGAGCACUUGAAGuacuucuagcuuaaugcgucugggauccgaagauuucugcuaga
(((.....((((((.(....(((.(((.((((((.(((((..((.((((((.(((((((((((.(((((.(((............)))))))).)))))))))))..)))))).))))))))))))).))).)))..).)))))).....)))

Structure
   uaaau      c uaau   g   u      a     uc  c      -A           G     G   uauuu 
ucu     aaaucu c    guu cag uguguu gaguu  ag agugcU  AAGUGCUUAUA UGCAG UAG     c
|||     |||||| |    ||| ||| |||||| |||||  || ||||||  ||||||||||| ||||| |||      
aga     uuuaga g    uag guc gcguaa uucga  uc ucauGA  UUCACGAGUGU ACGUC Auc     u
   ucguc      a --cc   g   u      -     --  u      AG           G     -   uacug 


Annotation confidence High
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Genome context
chr1: 3297603-3297755 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from dre-mir-20a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-20a-5p

Accession MIMAT0001786
Description Danio rerio dre-miR-20a-5p mature miRNA
Sequence 51 - UAAAGUGCUUAUAGUGCAGGUAG - 73
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-20a-3p

Accession MIMAT0003400
Description Danio rerio dre-miR-20a-3p mature miRNA
Sequence 88 - ACUGCAGUGUGAGCACUUGAAG - 109
Evidence experimental
cloned [1]
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293