Stem-loop sequence dre-mir-21-2

Accession

MI0001909 (change log)

Description

Danio rerio miR-21-2 stem-loop

Gene family

MIPF0000060; mir-21

Literature search

21 open access papers mention dre-mir-21-2
(174 sentences)

Stem-loop

           a   ---aa    -u   uuuc     ug        c      g     g uuug 
5' agacagac gua     agug  ccc    uguca  uagcuuau agacug uguug c    a
   |||||||| |||     ||||  |||    |||||  |||||||| |||||| ||||| |    g
3' uuuguuug cau     uuau  ggg    acagu  gucggaua ucugac acaac g    u
           g   gcagc    uc   uuuu     cu        a      g     g uuuu 

Deep sequencing

2639159 reads, 1.85e+05 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr15: 17373789-17373915 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir21-2
• EntrezGene:mir21-2
• RNAcentral:URS000075BDF5_7955
• miRBase Tracker:MI0001909

Mature sequence dre-miR-21

• Accession: MIMAT0001787
• Sequence: 34 - uagcuuaucagacugguguuggc - 56
• Deep sequencing: 5286827 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00001844D3_7955
• Predicted targets:
  • TargetScanFish:dre-miR-21

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).