miRBase entry: dre-mir-21-2

Stem-loop dre-mir-21-2


Accession
MI0001909
Description
Danio rerio dre-mir-21-2 precursor miRNA
Gene family
MIPF0000060; mir-21

Literature search
21 open access papers mention dre-mir-21-2
(177 sentences)

Sequence

2179077 reads, 153903 reads per million, 11 experiments
agacagacaguaaaagugucccuuucugucaugUAGCUUAUCAGACUGGUGUUGGCuuugaguuuuuggcaacagcagucuaauaggcugucugacauuuugggcuuauucgacguacgguuuguuu
.(((((((.(((..((((.(((....(((((..((((((((.((((((.(((((.(...........).))))).)))))).))))))))..)))))....)))..)))).....))).))))))).

Structure
a       a   ---aa    -u   uuuc     ug        C      G     G uuug 
 gacagac gua     agug  ccc    uguca  UAGCUUAU AGACUG UGUUG C    a
 ||||||| |||     ||||  |||    |||||  |||||||| |||||| ||||| |    g
 uuguuug cau     uuau  ggg    acagu  gucggaua ucugac acaac g    u
u       g   gcagc    uc   uuuu     cu        a      g     g uuuu 


Annotation confidence Not enough data
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Genome context
chr15: 17373789-17373915 [+]

Database links

Mature dre-miR-21

Accession MIMAT0001787
Description Danio rerio dre-miR-21 mature miRNA
Sequence 34 - UAGCUUAUCAGACUGGUGUUGGC - 56
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293