Stem-loop sequence dre-mir-23a-2

Accession

MI0001915 (change log)

Previous IDs

dre-mir-23a-3

Description

Danio rerio miR-23a-2 stem-loop

Gene family

MIPF0000027; mir-23

Literature search

11 open access papers mention dre-mir-23a-2
(208 sentences)

Stem-loop

       ---  -   c     -g               a       uuaaac 
5' cucu   uc ugc ggcca  gggaauuccuggcag gugauuu      c
   ||||   || ||| |||||  ||||||||||||||| |||||||      u
3' gaga   ag gug ucggu  ccuuuagggaccguu cacuaag      a
       cuc  u   c     aa               a       ucagua 

Deep sequencing

33279 reads, 4e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr3: 13406226-13406323 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-23a-2

• dre-mir-23a-2: chr3: 13406226-13406323 [+]
• dre-mir-27c: chr3: 13406451-13406538 [+]
• dre-mir-24-2: chr3: 13412979-13413060 [+]

Database links

• EntrezGene:mir23a-2
• EntrezGene:mir23a-2
• RNAcentral:URS000075A386_7955
• miRBase Tracker:MI0001915

Mature sequence dre-miR-23a-5p

• Accession: MIMAT0031944
• Sequence: 19 - gaauuccuggcagagugauuu - 39
• Deep sequencing: 1077 reads, 9 experiments
• Evidence: not experimental

Mature sequence dre-miR-23a-3p

• Accession: MIMAT0001790
• Previous IDs: dre-miR-23a
• Sequence: 57 - aucacauugccagggauuucca - 78
• Deep sequencing: 95168 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000391DB6_7955
• Predicted targets:
  • TargetScanFish:dre-miR-23a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).