miRBase entry: dre-mir-24-4

Stem-loop dre-mir-24-4


Accession
MI0001918
Description
Danio rerio dre-mir-24-4 precursor miRNA
Gene family
MIPF0000041; mir-24

Literature search
6 open access papers mention dre-mir-24-4
(82 sentences)

Sequence

12477 reads, 691 reads per million, 11 experiments
gagggcuguucccacuugugccugcuaaacugguaucaguauguugauuuagugcUGGCUCAGUUCAGCAGGAACAGgugugaaguccuc
(((((((..((.(((((((.((((((.((((((..(((((((.........))))))).)))))).)))))).))))))).)))))))))

Structure
       gu  c       g      a      ua       guu 
gagggcu  uc cacuugu ccugcu aacugg  ucaguau   g
|||||||  || ||||||| |||||| ||||||  |||||||   a
cuccuga  ag gugGACA GGACGA UUGACU  GGUcgug   u
       --  u       A      C      -C       auu 


Annotation confidence Not enough data
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Genome context
chr22: 5307485-5307574 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-24-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-24

Accession MIMAT0001792
Description Danio rerio dre-miR-24 mature miRNA
Sequence 56 - UGGCUCAGUUCAGCAGGAACAG - 77
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293