miRBase entry: dre-mir-24-2

Stem-loop dre-mir-24-2


Accession
MI0001919
Description
Danio rerio dre-mir-24-2 precursor miRNA
Gene family
MIPF0000041; mir-24

Literature search
6 open access papers mention dre-mir-24-2
(86 sentences)

Sequence

12425 reads, 681 reads per million, 11 experiments
gggcuggucuccugugccugcugugcugauaaucaguggacggcugugacUGGCUCAGUUCAGCAGGAACAGgggccugguc
.((((((.(((((((.(((((((.(((((...(((((..((....)).))))).))))).))))))).))))))).))))))

Structure
g      u       g       u     uaa     gg  g 
 ggcugg cuccugu ccugcug gcuga   ucagu  ac g
 |||||| ||||||| ||||||| |||||   |||||  ||  
 cugguc gggGACA GGACGAC UGACU   GGUca  ug c
-      c       A       U     --C     -g  u 


Annotation confidence High
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Genome context
chr3: 13412979-13413060 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-24-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-24

Accession MIMAT0001792
Description Danio rerio dre-miR-24 mature miRNA
Sequence 51 - UGGCUCAGUUCAGCAGGAACAG - 72
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293