miRBase entry: dre-mir-27b

Stem-loop dre-mir-27b


Accession
MI0001929
Description
Danio rerio dre-mir-27b precursor miRNA
Gene family
MIPF0000036; mir-27

Literature search
9 open access papers mention dre-mir-27b
(126 sentences)

Sequence

92964 reads, 6067 reads per million, 11 experiments
ucuuuucuagcaggugcAGAGCUUAGCUGAUUGGUGAACAgugauugaacucuuugUUCACAGUGGCUAAGUUCUGCAucugaggagagga
((((((((..((((((((((((((((((.((((.(((((((.((......)).))))))))))))))))))))))))))))).))))))))

Structure
        ag                  G    G       u  uu 
ucuuuucu  caggugcAGAGCUUAGCU AUUG UGAACAg ga  g
||||||||  |||||||||||||||||| |||| ||||||| ||   
aggagagg  gucuACGUCUUGAAUCGG UGAC ACUUguu cu  a
        -a                  -    -       u  ca 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr8: 30167435-30167525 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-27b-3p

Accession MIMAT0001797
Description Danio rerio dre-miR-27b-3p mature miRNA
Sequence 57 - UUCACAGUGGCUAAGUUCUGCA - 78
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-27b-5p

Accession MIMAT0031950
Description Danio rerio dre-miR-27b-5p mature miRNA
Sequence 18 - AGAGCUUAGCUGAUUGGUGAACA - 40
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293