Stem-loop dre-mir-27c

Accession

MI0001930

Description

Danio rerio dre-mir-27c precursor miRNA

Gene family

MIPF0000036; mir-27

Literature search

7 open access papers mention dre-mir-27c
(19 sentences)

Sequence

40223 reads, 2957 reads per million, 11 experiments

gguuguguggugucaggaCUUAACCCACUUGUGAACAAUGcaucgaacuucaaugUUCACAGUGGUUAAGUUCUGCcgccccuagacc
((((..(.((((.((((((((((((.(((.(((((((.((..........)).)))))))))))))))))))))).)))).)..))))

Structure

    gu u    u            C   U       A  cauc 
gguu  g ggug caggaCUUAACC ACU GUGAACA UG    g
||||  | |||| |||||||||||| ||| ||||||| ||     
ccag  c ccgc GUCUUGAAUUGG UGA CACUUgu ac    a
    au c    C            -   -       a  uuca 

Annotation confidence High

Genome context

chr3: 13406451-13406538 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-27c

Mature dre-miR-27c-5p

• Accession: MIMAT0003401
• Description: Danio rerio dre-miR-27c-5p mature miRNA
• Sequence: 19 - CUUAACCCACUUGUGAACAAUG - 40
• Evidence: experimental ; cloned [1]

Mature dre-miR-27c-3p

• Accession: MIMAT0001798
• Description: Danio rerio dre-miR-27c-3p mature miRNA
• Sequence: 56 - UUCACAGUGGUUAAGUUCUGC - 76
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293