Stem-loop sequence dre-mir-29b-2

Accession

MI0001934 (change log)

Description

Danio rerio miR-29b-2 stem-loop

Gene family

MIPF0000009; mir-29

Literature search

13 open access papers mention dre-mir-29b-2
(146 sentences)

Stem-loop

   u       c   -           c      gu      -g  uu 
5'  cuuccuc aga ugcugguuuca auggug  uuagau  ug  c
    ||||||| ||| ||||||||||| ||||||  ||||||  ||   
3'  ggagggg ucu gugacuaaagu uaccac  gaucug  ac  u
   g       u   u           u      --      aa  ca 

Deep sequencing

1130 reads, 63.6 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr4: 11608196-11608283 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-29b-2

• dre-mir-29b-2: chr4: 11608196-11608283 [-]
• dre-mir-29a: chr4: 11606758-11606883 [-]

Database links

• EntrezGene:mir29b-2
• EntrezGene:mir29b-2
• RNAcentral:URS000075CF1B_7955
• miRBase Tracker:MI0001934

Mature sequence dre-miR-29b

• Accession: MIMAT0001801
• Sequence: 55 - uagcaccauuugaaaucagugu - 76
• Deep sequencing: 2126 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00004D1411_7955
• Predicted targets:
  • TargetScanFish:dre-miR-29b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).