Stem-loop sequence dre-mir-29a

Accession

MI0001938 (change log)

Previous IDs

dre-mir-29a-1

Description

Danio rerio miR-29a stem-loop

Gene family

MIPF0000009; mir-29

Literature search

16 open access papers mention dre-mir-29a
(108 sentences)

Stem-loop

   u     cccucaucucucucucucuc      ccaaacg            cuu       u   - u cc 
5'  gaaga                    ucccca       augacugauuuc   uggugcu aga g c  a
    |||||                    ||||||       ||||||||||||   ||||||| ||| | |   
3'  cuucu                    aggggu       uauuggcuaaag   accacga ucu c g  u
   a     ---------------uaacu      -caguaa            uuu       -   a u uc 

Deep sequencing

2334 reads, 1.77e+05 reads per million, 18 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr4: 11606758-11606883 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-29a

• dre-mir-29b-2: chr4: 11608196-11608283 [-]
• dre-mir-29a: chr4: 11606758-11606883 [-]

Database links

• EntrezGene:mir29a-1
• EntrezGene:mir29a-1
• RNAcentral:URS000075A985_7955
• miRBase Tracker:MI0001938

Mature sequence dre-miR-29a

• Accession: MIMAT0001802
• Sequence: 81 - uagcaccauuugaaaucgguua - 102
• Deep sequencing: 2085 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000272A3D_7955
• Predicted targets:
  • TargetScanFish:dre-miR-29a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).