Stem-loop sequence dre-mir-30a

Accession

MI0001940 (change log)

Description

Danio rerio miR-30a stem-loop

Gene family

MIPF0000005; mir-30

Literature search

10 open access papers mention dre-mir-30a
(152 sentences)

Stem-loop

      uc  u c   u         ccc            ua  gc 
5' ggc  cu g agu guaaacauu   gacuggaaguug  au  a
   |||  || | ||| |||||||||   ||||||||||||  ||  g
3' ccg  gg c ucg cguuuguag   cugacuuucgac  ua  a
      gu  u a   u         --u            uc  aa 

Deep sequencing

65346 reads, 3.4e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr19: 4737576-4737664 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir30a
• RNAcentral:URS000075E29C_7955
• miRBase Tracker:MI0001940

Mature sequence dre-miR-30a-5p

• Accession: MIMAT0001803
• Previous IDs: dre-miR-30a
• Sequence: 14 - uguaaacauucccgacuggaag - 35
• Deep sequencing: 60552 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075CE19_7955
• Predicted targets:
  • TargetScanFish:dre-miR-30a

Mature sequence dre-miR-30a-3p

• Accession: MIMAT0031951
• Sequence: 57 - cuuucagucugauguuugcugc - 78
• Deep sequencing: 4767 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000776814_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).