Stem-loop dre-mir-30b

Accession

MI0001941

Description

Danio rerio dre-mir-30b precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

11 open access papers mention dre-mir-30b
(118 sentences)

Sequence

7303 reads, 528 reads per million, 11 experiments

uuccaguguagucgcUGUAAACAUCCUACACUCAGCUgugagcugcagacgaggcugggcggaggguguuugcugugacugucuggag
.(((((..(((((((.(((((((((((.(.(((((((.((.........)).))))))).).))))))))))).))))))).))))).

Structure

u     ug       U           A A       g  agc 
 uccag  uagucgc GUAAACAUCCU C CUCAGCU ug   u
 |||||  ||||||| ||||||||||| | ||||||| ||   g
 agguc  gucagug cguuuguggga g gggucgg gc   c
g     -u       u           g c       a  aga 

Annotation confidence High

Genome context

chr16: 25341724-25341811 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-30b

Mature dre-miR-30b

• Accession: MIMAT0001804
• Description: Danio rerio dre-miR-30b mature miRNA
• Sequence: 16 - UGUAAACAUCCUACACUCAGCU - 37
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293