Stem-loop sequence dre-mir-30c

Accession

MI0001944 (change log)

Previous IDs

dre-mir-30c-1

Description

Danio rerio miR-30c stem-loop

Gene family

MIPF0000005; mir-30

Literature search

12 open access papers mention dre-mir-30c
(133 sentences)

Stem-loop

   cu                   ua       a   gga    
5'   ucagggaguguaaacaucc  cacucuc gcu   gcg 
     |||||||||||||||||||  ||||||| |||   || c
3'   ggucucucgcguuuguagg  gugaggg cgg   cga 
   uc                   --       c   agc    

Deep sequencing

24249 reads, 1.18e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr13: 27804067-27804145 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-30c

• dre-mir-30e-2: chr13: 27795130-27795209 [+]
• dre-mir-30c: chr13: 27804067-27804145 [+]

Database links

• EntrezGene:mir30c
• EntrezGene:mir30c
• RNAcentral:URS000075AC12_7955
• miRBase Tracker:MI0001944

Mature sequence dre-miR-30c-5p

• Accession: MIMAT0001805
• Previous IDs: dre-miR-30c
• Sequence: 11 - uguaaacauccuacacucucag - 32
• Deep sequencing: 24071 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000049EDFD_7955
• Predicted targets:
  • TargetScanFish:dre-miR-30c

Mature sequence dre-miR-30c-3p

• Accession: MIMAT0031952
• Sequence: 50 - ccgggagugggauguuugcgcu - 71
• Deep sequencing: 178 reads, 9 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000076C188_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).