miRBase entry: dre-mir-96

Stem-loop dre-mir-96


Accession
MI0001955
Description
Danio rerio dre-mir-96 precursor miRNA
Gene family
MIPF0000072; mir-96

Literature search
7 open access papers mention dre-mir-96
(74 sentences)

Sequence

774 reads, 38 reads per million, 11 experiments
gcugggcgcucuucuuugccuguUUUGGCACUAGCACAUUUUUGCUuuuuuauauauaccuugagCAAUUAUGUGUAGUGCCAAUAUgggacaagacagacaugcuacuuaaaaaaaaaaucagc
((((((((.(((((((..(((((.(((((((((.(((((..((((((...............))))))..)))))))))))))).)))))..)))).)))..))))...............))))

Structure
    ---------------    -c   -    ug     U         G     UU      uuuuau 
gcug               ggcg  ucu ucuu  ccugu UUGGCACUA CACAU  UUGCUu      a
||||               ||||  ||| ||||  ||||| ||||||||| |||||  ||||||      u
cgac               ucgu  aga agaa  gggUA AACCGUGAU GUGUA  AACgag      a
    uaaaaaaaaaauuca    ac   c    ca     U         -     UU      uuccau 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr4: 15074715-15074839 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-96-5p

Accession MIMAT0001811
Description Danio rerio dre-miR-96-5p mature miRNA
Sequence 24 - UUUGGCACUAGCACAUUUUUGCU - 46
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-96-3p

Accession MIMAT0031956
Description Danio rerio dre-miR-96-3p mature miRNA
Sequence 66 - CAAUUAUGUGUAGUGCCAAUAU - 87
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293