miRBase entry: dre-mir-100-1

Stem-loop dre-mir-100-1


Accession
MI0001958
Description
Danio rerio dre-mir-100-1 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
5 open access papers mention dre-mir-100-1
(9 sentences)

Sequence

53058 reads, 4195 reads per million, 11 experiments
gaagagaccugccugcugacacaAACCCGUAGAUCCGAACUUGUGgugacuguccacaCAAGCUUGUAUCUAUAGGUAUCugucuguguggccuuc
((((......((((((.((((...(((.((((((.(((.((((((.((......)))))))).))).)))))).)))...)))).))).)))))))

Structure
    agaccu   -   u    caA   C      C   A      g  ac 
gaag      gcc ugc gaca   ACC GUAGAU CGA CUUGUG ug  u
||||      ||| ||| ||||   ||| |||||| ||| |||||| ||   
cuuc      cgg gug cugu   UGG UAUCUA GUU GAACac ac  g
    ------   u   u    CUA   A      U   C      -  cu 


Annotation confidence High
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Genome context
chr15: 21437633-21437728 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-100-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-100-5p

Accession MIMAT0001813
Description Danio rerio dre-miR-100-5p mature miRNA
Sequence 24 - AACCCGUAGAUCCGAACUUGUG - 45
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-100-3p

Accession MIMAT0031957
Description Danio rerio dre-miR-100-3p mature miRNA
Sequence 59 - CAAGCUUGUAUCUAUAGGUAUC - 80
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293