miRBase entry: dre-mir-124-4

Stem-loop dre-mir-124-4


Accession
MI0001969
Description
Danio rerio dre-mir-124-4 precursor miRNA
Gene family
MIPF0000021; mir-124

Literature search
23 open access papers mention dre-mir-124-4
(79 sentences)

Sequence

4345 reads, 291 reads per million, 7 experiments
gguuuuugcucuuUGUGUUCACAGUGGACCUUGAUuuaauuucaauacaauUAAGGCACGCGGUGAAUGCCAAgagagaagcc
(((((((.(((((.((((((((.(((..((((((((............))))))))..))).)))))))).))))))))))))

Structure
       g     U        A   GA        uaauu 
gguuuuu cucuu GUGUUCAC GUG  CCUUGAUu     u
||||||| ||||| |||||||| |||  ||||||||      
ccgaaga gagAA CGUAAGUG CGC  GGAAUuaa     c
       -     C        G   AC        cauaa 


Annotation confidence High
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Genome context
chr17: 27402261-27402343 [+]

Database links

Mature dre-miR-124-3p

Accession MIMAT0001819
Description Danio rerio dre-miR-124-3p mature miRNA
Sequence 52 - UAAGGCACGCGGUGAAUGCCAA - 73
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-124-4-5p

Accession MIMAT0031961
Description Danio rerio dre-miR-124-4-5p mature miRNA
Sequence 14 - UGUGUUCACAGUGGACCUUGAU - 35
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293