miRBase entry: dre-mir-125a-1

Stem-loop dre-mir-125a-1


Accession
MI0001972
Description
Danio rerio dre-mir-125a-1 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
14 open access papers mention dre-mir-125a-1
(54 sentences)

Sequence

12800 reads, 1071 reads per million, 10 experiments
guaugucucuuugUCCCUGAGACCCUUAACCUGUGaggucaaacuaggucacaggugagguccucaggaacagggcugcaugc
((((((..((((((.((((((..(((((.(((((((............))))))))))))..)))))).))))))..))))))

Structure
      cu      C      AC     A       gguca 
guaugu  cuuugU CCUGAG  CCUUA CCUGUGa     a
||||||  |||||| ||||||  ||||| |||||||      
cguacg  gggaca ggacuc  ggagu ggacacu     a
      uc      a      cu     -       ggauc 


Annotation confidence High
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Genome context
chr16: 24898171-24898253 [+]

Database links

Mature dre-miR-125a

Accession MIMAT0001820
Description Danio rerio dre-miR-125a mature miRNA
Sequence 14 - UCCCUGAGACCCUUAACCUGUG - 35
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293