miRBase entry: dre-mir-125b-2

Stem-loop dre-mir-125b-2

Accession

MI0001976

Description

Danio rerio dre-mir-125b-2 precursor miRNA

Literature search

25 open access papers mention dre-mir-125b-2
(191 sentences)

Sequence

11246 reads, 865 reads per million, 11 experiments

gugccccucuccuUCCCUGAGACCCUAACUUGUGAcguucugcuucgauguccaCGGGUUGGGUUCUCGGGAGCUgugagaggcac
(((((.(((...(((((.((((.((((((((((((((((.......))))).))))))))))).)))))))))....))).)))))

Structure

     c   -ucc     U    C           -     cu 
gugcc cuc    uUCCC GAGA CCUAACUUGUG Acguu  g
||||| |||    ||||| |||| ||||||||||| |||||  c
cacgg gag    GAGGG CUCU GGGUUGGGCac uguag  u
     a   ugUC     -    U           c     cu

Annotation confidence Medium

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Genome context

chr5: 29998762-29998847 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-125b-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-125b-5p

Accession	MIMAT0001821
Description	Danio rerio dre-miR-125b-5p mature miRNA
Sequence	14 - UCCCUGAGACCCUAACUUGUGA - 35
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-miR-125b-2-3p

Accession	MIMAT0031964
Description	Danio rerio dre-miR-125b-2-3p mature miRNA
Sequence	55 - CGGGUUGGGUUCUCGGGAGCU - 75
Evidence	not_experimental
Database links

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293