miRBase entry: dre-mir-128-1

Stem-loop dre-mir-128-1


Accession
MI0001980
Description
Danio rerio dre-mir-128-1 precursor miRNA
Gene family
MIPF0000048; mir-128

Literature search
5 open access papers mention dre-mir-128-1
(9 sentences)

Sequence

4930 reads, 268 reads per million, 11 experiments
uggaggaggagugcugggagaCGGGGCCGUGGCACUGUAUGAGAuucauguaggcuuucUCACAGUGAACCGGUCUCUUUUuccagcccucacugaca
((..((..(((.(((((((((.(((((((...((((((..((((.((.....)).))))..))))))...))))))).))))))))).))).))..))

Structure
  ga  ag   u         C       UGG      AU    u  a 
ug  gg  gag gcugggaga GGGGCCG   CACUGU  GAGA uc u
||  ||  ||| ||||||||| |||||||   ||||||  |||| || g
ac  uc  cuc cgaccuUUU CUCUGGC   GUGACA  cuuu gg u
  ag  -a   c         U       CAA      CU    c  a 


Annotation confidence High
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Genome context
chr22: 12374786-12374883 [+]

Database links

Mature dre-miR-128-3p

Accession MIMAT0001824
Description Danio rerio dre-miR-128-3p mature miRNA
Sequence 60 - UCACAGUGAACCGGUCUCUUUU - 81
Evidence experimental
cloned [1]

Mature dre-miR-128-5p

Accession MIMAT0031967
Description Danio rerio dre-miR-128-5p mature miRNA
Sequence 22 - CGGGGCCGUGGCACUGUAUGAGA - 44
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293