Stem-loop sequence dre-mir-128-1

AccessionMI0001980 (change log)
DescriptionDanio rerio miR-128-1 stem-loop
Gene family MIPF0000048; mir-128
Literature search

5 open access papers mention dre-mir-128-1
(9 sentences)

Stem-loop 
   u ga  ag   u         c       ugg      au    uu a 
5'  g  gg  gag gcugggaga ggggccg   cacugu  gaga  c u
    |  ||  ||| ||||||||| |||||||   ||||||  ||||  | g
3'  c  uc  cuc cgaccuuuu cucuggc   gugaca  cuuu  g u
   a ag  -a   c         u       caa      cu    cg a
Get sequence
Deep sequencing
5857 reads, 245 reads per million, 11 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr22: 12374786-12374883 [+]
sense
OTTDART00000035435 ; r3hdm1-001; intron 5
ENSDART00000146322 ; r3hdm1-001; intron 5
ENSDART00000091982 ; r3hdm1-201; intron 14
Database links

Mature sequence dre-miR-128-5p

Accession MIMAT0031967
Sequence

22 -  

cggggccguggcacuguaugaga

 - 44

Get sequence
Deep sequencing180 reads, 10 experiments
Evidence not experimental
Database links

Mature sequence dre-miR-128-3p

Accession MIMAT0001824
Previous IDsdre-miR-128
Sequence

60 -  

ucacagugaaccggucucuuuu

 - 81

Get sequence
Deep sequencing16969 reads, 11 experiments
Evidence experimental; cloned [1]

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).