miRBase entry: dre-mir-129-2

Stem-loop dre-mir-129-2


Accession
MI0001982
Description
Danio rerio dre-mir-129-2 precursor miRNA
Gene family
MIPF0000073; mir-129

Literature search
4 open access papers mention dre-mir-129-2
(16 sentences)

Sequence

388 reads, 28 reads per million, 8 experiments
gucuuucacgaauCUUUUUGCGGUCUGGGCUUGCUguucucaacuaucaaugggAAGCCCUUACCCCAAAAAGCAUuugcggagggc
(((((((.((((((((((((.(((..((((((.(((((..........))))).))))))..))).))))))).))))).)))))))

Structure
       a     -       C   CU      G     cuca 
gucuuuc cgaau CUUUUUG GGU  GGGCUU CUguu    a
||||||| ||||| ||||||| |||  |||||| |||||     
cgggagg guuUA GAAAAAC CCA  CCCGAA gguaa    c
       c     C       C   UU      g     cuau 


Annotation confidence High
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Genome context
chr7: 50287933-50288019 [-]

Database links

Mature dre-miR-129-3p

Accession MIMAT0003158
Description Danio rerio dre-miR-129-3p mature miRNA
Sequence 55 - AAGCCCUUACCCCAAAAAGCAU - 76
Evidence experimental
array [2]

Mature dre-miR-129-5p

Accession MIMAT0001825
Description Danio rerio dre-miR-129-5p mature miRNA
Sequence 14 - CUUUUUGCGGUCUGGGCUUGCU - 35
Evidence experimental
cloned [1]

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293

  2. PubMed ID: 15919954
    MicroRNA expression in zebrafish embryonic development
    "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
    "Science (2005) 309:310-311