Stem-loop sequence dre-mir-130a

Accession

MI0001984 (change log)

Previous IDs

dre-mir-130a-1

Description

Danio rerio miR-130a stem-loop

Gene family

MIPF0000034; mir-130

Literature search

6 open access papers mention dre-mir-130a
(135 sentences)

Stem-loop

   ug    u         c   u          a  --        
5'   ucug ccagugccc uuu auauuguacu cu  gauaacc 
     |||| ||||||||| ||| |||||||||| ||  |||||| c
3'   ggac gguuacggg aaa uguaacguga ga  uuauuga 
   ag    c         a   u          c  aa        

Deep sequencing

38302 reads, 1.31e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr10: 33377130-33377214 [-]
• Overlapping transcripts:

  sense

  ENSDART00000023509 ; SKA2-201; intron 1

Clustered miRNAs

< 10kb from dre-mir-130a

• dre-mir-130a: chr10: 33377130-33377214 [-]
• dre-mir-301a: chr10: 33377001-33377086 [-]
• dre-mir-454a: chr10: 33376818-33376941 [-]

Database links

• EntrezGene:mirn130a-1
• RNAcentral:URS000075A38D_7955
• miRBase Tracker:MI0001984

Mature sequence dre-miR-130a

• Accession: MIMAT0001826
• Sequence: 54 - cagugcaauguuaaaagggcau - 75
• Deep sequencing: 38272 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000315338_7955
• Predicted targets:
  • TargetScanFish:dre-miR-130a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).