miRBase entry: dre-mir-130a

Stem-loop dre-mir-130a

Accession

MI0001984

Description

Danio rerio dre-mir-130a precursor miRNA

Gene family

MIPF0000034; mir-130

Literature search

6 open access papers mention dre-mir-130a
(137 sentences)

Sequence

1742 reads, 111 reads per million, 11 experiments

ugucuguccagugccccuuuuauauuguacuacugauaacccaguuauuaaagCAGUGCAAUGUUAAAAGGGCAUuggccaggga
..((((.(((((((((.(((.((((((((((.((((((((...))))))..)).)))))))))).))).))))))))).))))..

Structure

ug    u         c   u          a  --      c 
  ucug ccagugccc uuu auauuguacu cu  gauaac  
  |||| ||||||||| ||| |||||||||| ||  |||||| c
  ggac gguUACGGG AAA UGUAACGUGA ga  uuauug  
ag    c         A   U          C  aa      a

Annotation confidence High

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Genome context

chr10: 33377130-33377214 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-130a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-130a

Accession	MIMAT0001826
Description	Danio rerio dre-miR-130a mature miRNA
Sequence	54 - CAGUGCAAUGUUAAAAGGGCAU - 75
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293