Stem-loop dre-mir-130c-1

Accession

MI0001987

Description

Danio rerio dre-mir-130c-1 precursor miRNA

Gene family

MIPF0000034; mir-130

Literature search

5 open access papers mention dre-mir-130c-1
(12 sentences)

Sequence

31638 reads, 1226 reads per million, 11 experiments

gggagaggucuguacggugauauugaccauguuuuguccauuGCCCUUUUUCUGUUGUACUACUggccaaucagaagagCAGUGCAAUAUUAAAAGGGCAUuggcugauagaacagaguccuucaccucucacccucuccu
((((((((..((...(((((....(((..(((((((((((.(((((((((..(((((((((.((.............)).)))))))))..))))))))).)))...))))))))..)))..)))))...)).))))))))

Structure

        uc  uac     uauu   ca        ---   u         UC         A  ggcca 
gggagagg  ug   gguga    gac  uguuuugu   cca uGCCCUUUU  UGUUGUACU CU     a
||||||||  ||   |||||    |||  ||||||||   ||| |||||||||  ||||||||| ||     u
uccucucc  ac   ccacu    cug  acaagaua   ggu ACGGGAAAA  AUAACGUGA ga     c
        -c  ucu     --uc   ag        guc   U         UU         C  gaaga 

Annotation confidence High

Genome context

chr10: 17453363-17453503 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-130c-1

Mature dre-miR-130c-3p

• Accession: MIMAT0001828
• Description: Danio rerio dre-miR-130c-3p mature miRNA
• Sequence: 80 - CAGUGCAAUAUUAAAAGGGCAU - 101
• Evidence: experimental ; cloned [1]

Mature dre-miR-130c-5p

• Accession: MIMAT0031969
• Description: Danio rerio dre-miR-130c-5p mature miRNA
• Sequence: 43 - GCCCUUUUUCUGUUGUACUACU - 64
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293