Stem-loop dre-mir-142a

Accession

MI0002005

Description

Danio rerio dre-mir-142a precursor miRNA

Gene family

MIPF0000084; mir-142

Literature search

9 open access papers mention dre-mir-142a
(272 sentences)

Sequence

7352 reads, 759 reads per million, 10 experiments

cguacagugcagucaucCAUAAAGUAGAAAGCACUACUaaaccccucgccacagUGUAGUGUUUCCUACUUUAUGGAugaguguacuguug
...((((((((.(((((((((((((((.(((((((((..................))))))))).))))))))))))))).))))))))..

Structure

cgu        g               A         Uaaacccc 
   acagugca ucaucCAUAAAGUAG AAGCACUAC        u
   |||||||| ||||||||||||||| |||||||||         
   ugucaugu aguAGGUAUUUCAUC UUUGUGAUG        c
-gu        g               C         Ugacaccg 

Annotation confidence High

Genome context

chr5: 3170736-3170826 [+]

Mature dre-miR-142a-5p

• Accession: MIMAT0001838
• Description: Danio rerio dre-miR-142a-5p mature miRNA
• Sequence: 18 - CAUAAAGUAGAAAGCACUACU - 38
• Evidence: experimental ; cloned [1]

Mature dre-miR-142a-3p

• Accession: MIMAT0003160
• Description: Danio rerio dre-miR-142a-3p mature miRNA
• Sequence: 55 - UGUAGUGUUUCCUACUUUAUGGA - 77
• Evidence: experimental ; array [2], in-situ [2]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293


2. PubMed ID: 15919954
   MicroRNA expression in zebrafish embryonic development
   "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
   "Science (2005) 309:310-311