Stem-loop sequence dre-mir-142a

Accession

MI0002005 (change log)

Description

Danio rerio miR-142a stem-loop

Gene family

MIPF0000084; mir-142

Literature search

9 open access papers mention dre-mir-142a
(256 sentences)

Stem-loop

   cgu        g               a         uaaacccc 
5'    acagugca ucauccauaaaguag aagcacuac        u
      |||||||| ||||||||||||||| |||||||||         
3'    ugucaugu aguagguauuucauc uuugugaug        c
   -gu        g               c         ugacaccg 

Deep sequencing

11656 reads, 8.39e+04 reads per million, 12 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr5: 3170736-3170826 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir142a
• EntrezGene:mir142a
• RNAcentral:URS000075F101_7955
• miRBase Tracker:MI0002005

Mature sequence dre-miR-142a-5p

• Accession: MIMAT0001838
• Sequence: 18 - cauaaaguagaaagcacuacu - 38
• Deep sequencing: 10525 reads, 10 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00001E0AEA_7955
• Predicted targets:
  • TargetScanFish:dre-miR-142a-5p

Mature sequence dre-miR-142a-3p

• Accession: MIMAT0003160
• Sequence: 55 - uguaguguuuccuacuuuaugga - 77
• Deep sequencing: 1127 reads, 10 experiments
• Evidence: experimental; array [2], in-situ [2]
• Database links:
  • RNAcentral:URS00002620A7_7955
• Predicted targets:
  • TargetScanFish:dre-miR-142a-3p

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).
2. PMID:15919954 "MicroRNA expression in zebrafish embryonic development" Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH Science. 309:310-311(2005).