Stem-loop sequence dre-mir-146a

Accession

MI0002012 (change log)

Description

Danio rerio miR-146a stem-loop

Gene family

MIPF0000103; mir-146

Literature search

12 open access papers mention dre-mir-146a
(156 sentences)

Stem-loop

           -------u       cu  u  cu         au           uguuca 
5' gaguuugu        uugagca  uu cc  gagaacuga  uccauagaugg      u
   ||||||||        |||||||  || ||  |||||||||  |||||||||||       
3' cuuaaaca        aauuugu  aa gg  uucuugacu  ggguaucuacu      g
           ucgucugu       cu  c  uc         -c           ugaaaa 

Deep sequencing

194517 reads, 1.32e+04 reads per million, 10 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr13: 11822170-11822283 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir146a
• RNAcentral:URS000075BAAC_7955
• miRBase Tracker:MI0002012

Mature sequence dre-miR-146a

• Accession: MIMAT0001843
• Sequence: 25 - ugagaacugaauuccauagaugg - 47
• Deep sequencing: 193388 reads, 10 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075DA96_7955
• Predicted targets:
  • TargetScanFish:dre-miR-146a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).