Stem-loop sequence dre-mir-146b

Accession

MI0002013 (change log)

Previous IDs

dre-mir-146b-1

Description

Danio rerio miR-146b stem-loop

Gene family

MIPF0000103; mir-146

Literature search

5 open access papers mention dre-mir-146b
(126 sentences)

Stem-loop

     -   ug    u              aa    gucugcu 
5' gc ucu  gcuu gagaacugaauucc  gggu       u
   || |||  |||| ||||||||||||||  ||||        
3' cg agg  ugaa uucuugacuugagg  cccg       u
     u   uu    -              ca    acuuaua 

Deep sequencing

26165 reads, 1.36e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr21: 41639979-41640058 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir146b-1
• EntrezGene:mir146b-1
• RNAcentral:URS000075D30A_7955
• miRBase Tracker:MI0002013

Mature sequence dre-miR-146b

• Accession: MIMAT0001844
• Sequence: 12 - ugagaacugaauuccaagggug - 33
• Deep sequencing: 25998 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075EBCB_7955
• Predicted targets:
  • TargetScanFish:dre-miR-146b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).