Stem-loop sequence dre-mir-155

Accession

MI0002023 (change log)

Description

Danio rerio miR-155 stem-loop

Gene family

MIPF0000157; mir-155

Literature search

9 open access papers mention dre-mir-155
(47 sentences)

Stem-loop

            u           c  g     g     gu 
5' uggugcagg uuaaugcuaau gu auagg guuua  g
   ||||||||| ||||||||||| || ||||| |||||  c
3' aucgcguuc aauuacgauug cg uaucc caagu  u
            u           u  -     a     ag 

Deep sequencing

1961 reads, 36.4 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr1: 576444-576521 [+]
• Overlapping transcripts:

  sense

  OTTDART00000040955 ; mrpl39-002; intron 10

  ENSDART00000060944 ; mrpl39-002; intron 10

Database links

• EntrezGene:mir155
• EntrezGene:mir155
• RNAcentral:URS000075E28F_7955
• miRBase Tracker:MI0002023

Mature sequence dre-miR-155

• Accession: MIMAT0001851
• Sequence: 11 - uuaaugcuaaucgugauagggg - 32
• Deep sequencing: 1958 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075A65A_7955
• Predicted targets:
  • TargetScanFish:dre-miR-155

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).