Stem-loop sequence dre-mir-190a

Accession

MI0002027 (change log)

Previous IDs

dre-mir-190

Description

Danio rerio miR-190 stem-loop

Gene family

MIPF0000076; mir-190

Literature search

3 open access papers mention dre-mir-190a
(5 sentences)

Stem-loop

   ucuggaggugagguagaccuggaagccuuucu     c u    -uu                ua     uuau 
5'                                 gcagg c cugu   gauauguuugauauau  gguug    u
                                   ||||| | ||||   ||||||||||||||||  |||||     
3'                                 cgucc g gaca   uuauacaaacuauaua  ucaac    c
   ---------------------gaccucugucu     u u    ucc                --     cugu 

Deep sequencing

236 reads, 0 reads per million, 10 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr25: 33139075-33139200 [+]
• Overlapping transcripts:

  sense

  ENSDART00000023584 ; TLN2 (2 of 2)-201; intron 38

Database links

• EntrezGene:mir190
• EntrezGene:mir190
• RNAcentral:URS000075A36C_7955
• miRBase Tracker:MI0002027

Mature sequence dre-miR-190a

• Accession: MIMAT0001854
• Previous IDs: dre-miR-190
• Sequence: 46 - ugauauguuugauauauuaggu - 67
• Deep sequencing: 229 reads, 10 experiments
• Evidence: by similarity; MI0000232
• Database links:
  • RNAcentral:URS0000520927_7955
• Predicted targets:
  • TargetScanFish:dre-miR-190

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).