Stem-loop sequence dre-mir-462

Accession

MI0002028 (change log)

Description

Danio rerio miR-462 stem-loop

Gene family

MIPF0001755; mir-462

Literature search

4 open access papers mention dre-mir-462
(16 sentences)

Stem-loop

   --------------------gucuggauggua      c     au       u ug   g 
5'                                 acggaa ccaua  gcagcug u  guu a
                                   |||||| |||||  ||||||| |  |||  
3'                                 ugccuu ggugu  ugucgac a  uag u
   uagaguuacucgaggacguucuuuccuccccg      a     -c       - gu   u 

Deep sequencing

567657 reads, 3.81e+04 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr8: 26082308-26082409 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-462

• dre-mir-462: chr8: 26082308-26082409 [+]
• dre-mir-731: chr8: 26082534-26082623 [+]

Database links

• EntrezGene:mir462
• EntrezGene:mir462
• RNAcentral:URS000075D740_7955
• miRBase Tracker:MI0002028

Mature sequence dre-miR-462

• Accession: MIMAT0001855
• Sequence: 11 - uaacggaacccauaaugcagcu - 32
• Deep sequencing: 566696 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075CE5A_7955
• Predicted targets:
  • TargetScanFish:dre-miR-462

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).