miRBase entry: dre-mir-462

Stem-loop dre-mir-462


Accession
MI0002028
Description
Danio rerio dre-mir-462 precursor miRNA
Gene family
MIPF0001755; mir-462

Literature search
4 open access papers mention dre-mir-462
(16 sentences)

Sequence

487048 reads, 33562 reads per million, 11 experiments
gucuggauggUAACGGAACCCAUAAUGCAGCUguuugguugauugauugacagcugucuguggauuccgugccccuccuuucuugcaggagcucauugagau
((((.(((((..((((((.(((((..(((((((((..(((....))).))))))))).))))).))))))((.(((.(......).))).))))))).))))

Structure
    g     --------------------UA      C     AU         ug   g 
gucu gaugg                      ACGGAA CCAUA  GCAGCUguu  guu a
|||| |||||                      |||||| |||||  |||||||||  |||  
uaga uuacu                      ugccuu ggugu  ugucgacag  uag u
    g     cgaggacguucuuuccuccccg      a     -c         -u   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr8: 26082308-26082409 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-462
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-462

Accession MIMAT0001855
Description Danio rerio dre-miR-462 mature miRNA
Sequence 11 - UAACGGAACCCAUAAUGCAGCU - 32
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293