miRBase entry: dre-mir-193a-1

Stem-loop dre-mir-193a-1


Accession
MI0002029
Description
Danio rerio dre-mir-193a-1 precursor miRNA
Gene family
MIPF0000082; mir-193

Literature search
3 open access papers mention dre-mir-193a-1
(7 sentences)

Sequence

142 reads, 23 reads per million, 11 experiments
gacauuaauguguuagagguUGGGUCUUUGCGGGCAAGGUGAguaguuaaauuuacucucAACUGGCCUACAAAGUCCCAGUuucuggcucauguuauc
.......(((.(((((((((((((.(((((.((((.((.((((.(((.......))))))).)).)))).))))).))))))))))))).)))......

Structure
gacauua   u             U     C    A  G    u   ua 
       aug guuagagguUGGG CUUUG GGGC AG UGAg agu  a
       ||| ||||||||||||| ||||| |||| || |||| |||  a
       uac cggucuuUGACCC GAAAC UCCG UC Acuc uca  u
-cuauug   u             U     A    G  A    -   uu 


Annotation confidence High
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Genome context
chr3: 35959912-35960010 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-193a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-193a-3p

Accession MIMAT0001856
Description Danio rerio dre-miR-193a-3p mature miRNA
Sequence 61 - AACUGGCCUACAAAGUCCCAGU - 82
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-193a-5p

Accession MIMAT0031981
Description Danio rerio dre-miR-193a-5p mature miRNA
Sequence 21 - UGGGUCUUUGCGGGCAAGGUGA - 42
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293