Stem-loop dre-mir-206-1

Accession

MI0002045

Description

Danio rerio dre-mir-206-1 precursor miRNA

Gene family

MIPF0000038; mir-1

Literature search

14 open access papers mention dre-mir-206-1
(206 sentences)

Sequence

460782 reads, 28760 reads per million, 5 experiments

gaauguugccucuugugaagACAUGCUUCCUUAUAUGCCCAUAuuaaugcucaaguuaUGGAAUGUAAGGAAGUGUGUGGuuucagggggaaauuuguc
((((....(((((((.((..((((((((((((((((..(((((.............))))).))))))))))))))))..)).)))))))..))))...

Structure

---    guug       u  ag                GC     uuaau 
   gaau    ccucuug ga  ACAUGCUUCCUUAUAU  CCAUA     g
   ||||    ||||||| ||  ||||||||||||||||  |||||     c
   uuua    gggggac uu  UGUGUGAAGGAAUGUA  GGUau     u
cug    --aa       u  GG                -A     ugaac 

Annotation confidence High

Genome context

chr20: 19544648-19544746 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-206-1

Mature dre-miR-206-3p

• Accession: MIMAT0001866
• Description: Danio rerio dre-miR-206-3p mature miRNA
• Sequence: 59 - UGGAAUGUAAGGAAGUGUGUGG - 80
• Evidence: experimental ; cloned [1]

Mature dre-miR-206-5p

• Accession: MIMAT0031988
• Description: Danio rerio dre-miR-206-5p mature miRNA
• Sequence: 21 - ACAUGCUUCCUUAUAUGCCCAUA - 43
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293