Stem-loop sequence dre-mir-216b

Accession

MI0002048 (change log)

Previous IDs

dre-mir-216b-1

Description

Danio rerio miR-216b stem-loop

Gene family

MIPF0000054; mir-216

Literature search

1 open access papers mention dre-mir-216b
(3 sentences)

Stem-loop

     u     gg        g    -   c     ugu   u 
5' ac gacug  uaaucucu cagg caa uguga   gau a
   || |||||  |||||||| |||| ||| |||||   |||  
3' ug cugac  guuggaga gucc guu acacu   cug c
     u     ga        a    a   -     ---   a 

Deep sequencing

230 reads, 0 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr22: 28780257-28780333 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-216b

• dre-mir-216b: chr22: 28780257-28780333 [-]
• dre-mir-216a: chr22: 28779949-28780037 [-]
• dre-mir-217: chr22: 28779715-28779812 [-]

Database links

• EntrezGene:mir216b-1
• EntrezGene:mir216b-1
• miRBase Tracker:MI0002048

Mature sequence dre-miR-216b

• Accession: MIMAT0001867
• Sequence: 11 - uaaucucugcaggcaacuguga - 32
• Deep sequencing: 206 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanFish:dre-miR-216b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).