miRBase entry: dre-mir-218b

Stem-loop dre-mir-218b


Accession
MI0002053
Description
Danio rerio dre-mir-218b precursor miRNA
Gene family
MIPF0000026; mir-218

Literature search
6 open access papers mention dre-mir-218b
(84 sentences)

Sequence

58 reads, 8 reads per million, 10 experiments
caggacaccaUUGUGCUUGAUCUAACCAUGCAguucccuuucuguccaugguugugccaagcacuuuggagacuug
((((.(.(((..(((((((...(((((((((((........)))..))))))))...)))))))..))).).))))

Structure
    a a   UU       AUC        --   uuc 
cagg c cca  GUGCUUG   UAACCAUG  CAg   c
|||| | |||  |||||||   ||||||||  |||    
guuc g ggu  cacgaac   guugguac  guc   c
    a a   uu       cgu        cu   uuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr10: 17695265-17695340 [+]

Database links

Mature dre-miR-218b

Accession MIMAT0001869
Description Danio rerio dre-miR-218b mature miRNA
Sequence 11 - UUGUGCUUGAUCUAACCAUGCA - 32
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293