Stem-loop sequence dre-mir-301a

Accession

MI0002059 (change log)

Previous IDs

dre-mir-301a-1

Description

Danio rerio miR-301a stem-loop

Gene family

MIPF0000034; mir-130

Literature search

3 open access papers mention dre-mir-301a
(4 sentences)

Stem-loop

         aa   gu   c    --uu -        a  -  auu 
5' gcuguu  cag  gcu ugac    c auugcacu cu gu   g
   ||||||  |||  ||| ||||    | |||||||| || ||    
3' cgacga  guc  cga acug    g uaacguga ga cg   g
         ga   ug   a    uuau a        c  u  aca 

Deep sequencing

7333 reads, 209 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr10: 33377001-33377086 [-]
• Overlapping transcripts:

  sense

  ENSDART00000023509 ; SKA2-201; intron 1

Clustered miRNAs

< 10kb from dre-mir-301a

• dre-mir-130a: chr10: 33377130-33377214 [-]
• dre-mir-301a: chr10: 33377001-33377086 [-]
• dre-mir-454a: chr10: 33376818-33376941 [-]

Database links

• EntrezGene:mir301a-1
• EntrezGene:mir301a-1
• RNAcentral:URS000075B073_7955
• miRBase Tracker:MI0002059

Mature sequence dre-miR-301a

• Accession: MIMAT0001870
• Sequence: 51 - cagugcaauaguauugucaaag - 72
• Deep sequencing: 7323 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075D7F6_7955
• Predicted targets:
  • TargetScanFish:dre-miR-301a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).