Stem-loop sequence dre-mir-338-1

Accession

MI0002063 (change log)

Description

Danio rerio miR-338-1 stem-loop

Gene family

MIPF0000097; mir-338

Literature search

4 open access papers mention dre-mir-338-1
(14 sentences)

Stem-loop

      -u     cu       uc  -         ccu     uuu 
5' ggu  ucucc  gcaacaa  uc cugaugcug   gagug   u
   |||  |||||  |||||||  || |||||||||   |||||   u
3' cca  ggagg  cguuguu  ag gacuacgac   cucac   c
      cu     -c       uu  u         ---     cuu 

Deep sequencing

8634 reads, 1.11e+05 reads per million, 17 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr12: 35710521-35710605 [-]	sense OTTDART00000048001 ; aatkb-001; intron 7 ENSDART00000111560 ; aatkb-001; intron 7
KZ114929.1: 91128-91212 [-]	sense OTTDART00000048001 ; aatkb-001; intron 7 ENSDART00000111560 ; aatkb-001; intron 7
KZ115395.1: 91834-91918 [-]	sense OTTDART00000048001 ; aatkb-001; intron 7 ENSDART00000111560 ; aatkb-001; intron 7

Database links

• EntrezGene:mir338-1
• EntrezGene:mir338-1
• RNAcentral:URS000075C446_7955
• miRBase Tracker:MI0002063

Mature sequence dre-miR-338

• Accession: MIMAT0001873
• Sequence: 52 - uccagcaucagugauuuuguug - 73
• Deep sequencing: 17134 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00000254A6_7955
• Predicted targets:
  • TargetScanFish:dre-miR-338

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).