miRBase entry: dre-mir-338-2

Stem-loop dre-mir-338-2


Accession
MI0002064
Description
Danio rerio dre-mir-338-2 precursor miRNA
Gene family
MIPF0000097; mir-338

Literature search
4 open access papers mention dre-mir-338-2
(14 sentences)

Sequence

6909 reads, 513 reads per million, 12 experiments
guguguguguguguuucuggugccugcugagaacaauauccugaugcugaaugaguguguugaaggaaacUCCAGCAUCAGUGAUUUUGUUGccagaggagcacuuugggcauccuguguauau
(((((...(.((((((..(((((((.(((..(((((.((((((((((((...((((............))))))))))))).))).)))))..))).)).)))))..)))))).)....)))))

Structure
     -ugu u      cu     -  g   ag     u   -         aau    guguu 
gugug    g guguuu  ggugc cu cug  aacaa auc cugaugcug   gagu     g
|||||    | ||||||  ||||| || |||  ||||| ||| |||||||||   ||||      
uauau    c uacggg  ucacg gg gac  UUGUU UAG GACUACGAC   CUca     a
     gugu c      uu     a  a   cG     U   U         ---    aagga 


Annotation confidence High
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Genome context
chr12: 17727528-17727651 [+]

Database links

Mature dre-miR-338

Accession MIMAT0001873
Description Danio rerio dre-miR-338 mature miRNA
Sequence 71 - UCCAGCAUCAGUGAUUUUGUUG - 92
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293